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Volume 29 - Bioinformatics 2004Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand, January 2004Australian Computer Science Communications, Vol. 26, No. 4This volume contains the proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand, January 2004. Where indicated, the paper is available for download in PDF or Postscript format. The series is published by, and most papers are copyright of, the Australian Computer Society Inc. Reproduction for academic research and not-for-profit purposes is granted provided the copyright notice on the first page of each paper is included.
Volume CitationChen, Y.-P.P., Ed. (2004). Bioinformatics 2004. Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC2004). CRPIT. 29. Dunedin, New Zealand, ACS.
Papers Included in the VolumeBiro, J.M.K. and Biro, J.C. (2004). Recognition Sequences in the Restriction Endonucleases. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 217-222. |
| Bourne, P. (2004). The Future of Bioinformatics. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 3. |
| Brown, A.L. (2004). Constructing Genome Scale Suffix Trees. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 105-112. |
| Carlsson, M. and Beldiceanu, N. (2004). Dispensation Order Generation for Pyrosequencing. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 327-332. |
| Carrizo, S.F. (2004). Phylogenetic Trees: An Information Visualisation Perspective. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 315-320. |
| Chattaraj, A. and Williams, H.E. (2004). Variable-length Intervals in Homology Search. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 85-91. |
| Chen, H., Hu, X., Yoo, I. and Zhou, H.-X. (2004). Classification Comparison of Prediction of Solvent Accessibility From Protein Sequences. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 333-338. |
| Datta, S. and Datta, S. (2004). An Empirical Bayes Adjustment to Multiple p-values for the Detection of Differentially Expressed Genes in Microarray Experiments. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 155-159. |
| Dayalan, S., Bevinakoppa, S. and Schroder, H. (2004). A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 131-137. |
| Deogun, J.S., Donis, R., Komina, O. and Ma, F. (2004). RNA Secondary Structure Prediction with Simple Pseudoknots. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 239-246. |
| Deogun, J.S., Ma, F. and Yang, J. (2004). EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 113-122. |
| Dukka, B.K.C., Akutsu, T., Seki, T. and Tomita, E. (2004). Protein Side-chain Packing Problem: A Maximum Edge-weight Clique Algorithmic Approach. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 191-200. |
| Dwyer, T., Rolletschek, H. and Schreiber, F. (2004). Representing Experimental Biological Data in Metabolic Networks. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 13-20. |
| Feng, D.D. (2004). Molecular Imaging and Biomedical Process Modeling. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 5-10. |
| Fukuda, K.I. and Takagi, T. (2004). A Pathway Editor for Literature-based Knowledge Curation. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 339-344. |
| Goh, L., Kasabov, N. and Song, Q. (2004). A Novel Feature Selection Method to Improve Classification of Gene Expression Data. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 161-166. |
| Goode, M., Buckler, E., Drummond, A., Strimmer, K. and Rodrigo, A. (2004). A Brief Introduction to the Phylogenetic Analysis Library V1.5. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 175-179. |
| Guo, J., Lin, Y. and Sun, Z. (2004). A Novel Method for Protein Subcellular Localization Based on Boosting and Probabilistic Neural Network. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 21-27. |
| Hall, R. and Stern, L. (2004). A Rapid Method of Whole Genome Visualisation Illustrating Features in Both Coding and Non-coding Regions. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 285-290. |
| Hallinan, J. and Wiles, J. (2004). Evolving Genetic Regulatory Networks Using an Artificial Genome. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 291-296. |
| He, J., Chiu, W., Ranjan, D., Schmid, M.F. and Jiang, W. (2004). Detecting Local Symmetry Axis in 3-dimensional Virus Structures. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 265-270. |
| Hering, J.A., Haris, P.I. and Innocent, P.R. (2004). Empirical Knowledge and Genetic Algorithms for Selection of Amide I Frequencies in Protein Secondary Structure Prediction. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 345-350. |
| Hoy, J.E.S., McCulloch, A.F. and McDonald, J.R. (2004). BRINet: A BioResource Integration Network. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 29-34. |
| Hu, X. and Yoo, I. (2004). Cluster Ensemble and Its Applications in Gene Expression Analysis. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 297-302. |
| Kaburagi, T., Hashimoto, S., Matsumoto, T., Muramatsu, D. and Sasaki, M. (2004). Transmembrane Region Prediction with Hydropathy Index/Charge Two-Dimensional Trajectories of Stochastic Dynamical Systems. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 35-42. |
| Kong, W., Tan, P., Tham, L. and Wong, K.Y. (2004). Support Vector Machine Approach for Cancer Detection Using Amplified Fragment Length Polymorphism (AFLP) Screening Method. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 63-66. |
| Lai, P., Church, W.B., Kaplan, W. and Wong, R.K. (2004). Informative 3D Visualization of Multiple Protein Structures. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 201-208. |
| Li, J., Liu, H. and Wong, L. (2004). Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 67-74. |
| Luo, H. and Luo, J. (2004). Initial SARS Genome Data Analysis Using a Bioinformatics Platform. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 271-276. |
| Maglia, A.M., Ghatti, V.R. and Leopold, J.L. (2004). Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 181-189. |
| McLachlan, G.J., Ambroise, C., Chang, S. and Mar, J.C. (2004). On the Simultaneous Use of Clinical and Microarray Expression Data in the Cluster Analysis of Tissue Samples. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 167-171. |
| Meintjes, P. and Rodrigo, A. (2004). Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 277-282. |
| Nagasaki, M., Doi, A., Matsuno, H. and Miyano, S. (2004). Integrating Biopathway Databases for Large-scale Modeling and Simulation. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 43-52. |
| Neuhauser, M. and Lam, F.C. (2004). Nonparametric Approaches to Detecting Differentially Expressed Genes in Replicated Microarray Experiments. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 139-143. |
| Ng, S.-K., Zhu, Z. and Ong, Y.-S. (2004). Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 123-129. |
| Nicolau Jr., D.V. and Nicolau, D.V. (2004). Towards a Theory of Protein Adsorption: Predicting the Adsorption of Proteins on Surfaces via a Piecewise Linear Model. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 351-356. |
| Pai, T.-W., Chang, W.-Y., Chang, M.D.-T., Chu, J.-H. and Tai, H.L. (2004). Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 93-98. |
| Riaz, T. and Li, K.-B.W., Yi (2004). Multiple Sequence Alignment Using Tabu Search. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 223-232. |
| Sarai, A., Gromiha, M.M., Kono, H. and Selvaraj, S. (2004). Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 233-238. |
| Shehadi, I.A., Ilyin, V., Murga, L.F., Ondrechen, M.J. and Uzun, A. (2004). THEMATICS is Effective for Active Site Prediction in Comparative Model Structures. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 209-215. |
| Sun, Z. and Deogun, J.S. (2004). Local Prediction Approach of Protein Classification using Probabilistic Suffix Trees. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 357-362. |
| Wang, D., Lauria, M., Wright, F.A. and Yuan, B. (2004). Mega Weaver: A Simple Iterative Approach for BAC Consensus Assembly. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 145-153. |
| Wong, P.W.H., Lam, T.W., Lin, M., Mui, Y.C., Yiu, S.M., Kung, H.F. and Cheung, Y.T. (2004). Filtering of Ineffective siRNAs and Improved siRNA Design Tool. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 247-255. |
| Wu, X., Cheng, J., Song, C. and Wang, B. (2004). A Combined Model and a Varied Gibbs Sampling Algorithm Used for Motif Discovery. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 99-104. |
| Wuensche, B. (2004). Advanced Texturing Techniques for the Effective Visualization of Neoroanatomy from Diffusion Tensor Imaging Data. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 303-308. |
| Xu, Y., Deng, X. and Wang, L. (2004). Exact Pattern Matching for RNA Secondary Structures. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 257-263. |
| Yao, D., Li, M., Lu, Y., Lin, N., Noble, N., Payan, D.G., Qu, K., Sun, H., Wang, J. and Zhu, X. (2004). PathwayFinder: Paving the Way Towards Automatic Pathway Extraction. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 53-62. |
| Yeung, L.K., Kong, R., Liew, A.W.-C., Szeto, L.K., Yan, H. and Yang, M. (2004). Measuring Correlation between Microarray Time-series Data using Dominant Spectrum Component. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 309-314. |
| Yu, L.T.H., Chan, S.C.F. and Chung, F.-l. (2004). Using Emerging Pattern Based Projected Clustering and Gene Expression Data for Cancer Detection. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 75-84. |
| Yu, Z.-G. and Anh, V. (2004). Phylogenetic Tree of Prokaryotes Based on the Complete Genomes using Fractal and Correlation Analyses. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P.P., Ed. ACS. 321-326. |
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Papers listed: 50
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