Transmembrane Region Prediction with Hydropathy Index/Charge Two-Dimensional Trajectories of Stochastic Dynamical Systems

Kaburagi, T., Hashimoto, S., Matsumoto, T., Muramatsu, D. and Sasaki, M.

A new algorithm is proposed for predicting transmembrane regions from two dimensional vector trajectories consisting of hydropathy index and charge of a test amino acid sequence by stochastic dynamical system models. The prediction accuracy of a preliminary experiment is 96.09%. Since no fine-tuning is done, this appears encouraging.

Cite as: Kaburagi, T., Hashimoto, S., Matsumoto, T., Muramatsu, D. and Sasaki, M. (2004). Transmembrane Region Prediction with Hydropathy Index/Charge Two-Dimensional Trajectories of Stochastic Dynamical Systems. In Proc. Second Asia-Pacific Bioinformatics Conference (APBC2004), Dunedin, New Zealand. CRPIT, 29. Chen, Y.-P. P., Ed. ACS. 35-42.

(from crpit.com) (local if available)